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e. AAC, ACA, CAA, GTT, TGT, TTG were recorded as AAC. The most abundant repeat motif in these libraries was AG, followed by ATC, AC and AAG. A summary of the abundance of each repeat motif is shown in Table?S1. The three minisatellites detected were two 14?bp motifs (CTCACTCACACACA and ACACACACTCACTC) and one 13?bp motif (CACCACCTTCCAT), though only the latter was tested as a potential marker. A total of 680?M.?phaseolina sequences have been submitted to GenBank, NCBI, with accession numbers GU943792-GU944472; the marker ID numbers indicated in this manuscript correspond to the contig numbers for the sequences submitted to the NCBI Database. One hundred and eighty-two primer sets http://www.selleckchem.com/products/z-vad-fmk.html were designed and tested, from which 147 amplified >90% of the 24?M.?phaseolina isolates tested, 23 amplified http://www.selleckchem.com/products/ly2157299.html StvMPh_197 and StvMPh_45) there were isolates harbouring either allele A or allele B, while other isolates had both alleles, which may reflect the presence of heterokaryons. In general, the calculated percentage of multiallelic loci in M.?phaseolina isolates from soybean (average 7��4%) was lower than for isolates from maize, pumpkin, snap bean and sunflower, which ranged from an average of 10��8�C12��1% (Fig.?1). The total range for percentage of multiallelic loci was from a minimum of 5��6% for http://www.selleck.cn/products/XL184.html soybean isolate TN272 to a maximum of 16��9% for sunflower isolate TN410 (Fig.?1), indicating a variable degree of heterozygosity in the isolates. When a large number of microsatellite markers are developed, it is useful to identify subsets of markers that can provide the maximum discrimination of DNA samples, thus reducing the cost of future experiments. The software called upic (unique pattern informative combination) determines the number of samples discriminated by each microsatellite marker (upic score) and identifies the combination of the minimum number of markers that can discriminate all the samples tested (Arias et?al., 2009). The upic software was used to identify the best markers to use in future experiments with M.?phaseolina, and the upic scores different from zero were reported, as zero indicates that no sample is being uniquely discriminated by the marker (Table?2). Cluster analysis was performed for the 24?M.
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