Detailed Remarks Of PF-562271 In Note By Note Order

The strength of correlations, as well as the significance level of P values after an FDR correction, are indicated on a grey scale ranging from blank (|r| close to 0 and associated P value close to 1) to black (|r| close to 1 and associated P value close to 0). Loci in-between the two triangles are ordered according to the map frame given in Figure 1. Only polymorphic loci with the centromere predicted by the best rearrangement model (based on least square means) is indicated by dotted or filled lines depending on the whether the degree of collinearity was total or partial, respectively, and by black or gray lines depending on whether the haploid parent was Yudal or Darmor-bzh respectively. Figure S7. Relationship between meiotic behavior and the number of removed regions in progeny of haploid Darmor-bzh (A) and Yudal (B). The percentage of pollen mother cells with multivalents (diamond), 19 bivalents (square) and univalents (triangle). Figure S8. Graphical analysis of the residuals in the reduced best model obtained using BIC criterion for the rearrangement (A) and breakpoint (B) rate. The conditional studentized residuals at each locus were calculated by SAS software using the formulae: r/�� Var (r) with r?=?log(Fo/(1?Fo))?log(Fp/(1?Fp)), Fo and Fp the frequencies of non transmission observed and predicted by the model at each locus, respectively. Top left (in A and B): studentized residuals plotted against the linear predictor log(Fp/(1?Fp)). Top right: distribution of studentized residuals compared with the normal distribution expected (line). Bottom right: Q-Q plot of residual, quantile versus quantiles of the Normal distribution. Bottom left: boxplot of studentized residuals were representing the 25 and 75% quantile (box), the standard deviation (top and bottom traits), the mean (line), and the outliers (points). Table S1. Raw genotyping data for the presence/absence of haploid parental alleles in the progenies of haploid Darmor-bzh and Yudal. The names of F1 offspring used in this study are in the first row. In the first column, information on the locus is provided according to the following code: 1?=?Absence of parental allele; 2?=?Presence of parental allele; 3?=?missing data; 4?=?Locus not genotyped; D?=?absence of Darmor-bzh euploid allele; Y?=?Absence of Yudal euploid Allele. A summary of the rearrangements in each individual is below the genotyping data.